Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 166 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 62700 MD5sum: 9b8e4934258dd7fe51d63d2919dfae03 SHA1: 702db820a2645a9424968bf81309faa7a820f745 SHA256: 8e13fb7ee3b56cf332a5c44da98294417428900efe5cee104b0ddf8a1380f083 Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: barriers-dbgsym Source: barriers Version: 1.8.1-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 194 Depends: barriers (= 1.8.1-1) Filename: amd64/barriers-dbgsym_1.8.1-1_amd64.deb Size: 136252 MD5sum: 03e2d86f1b4f9cb28f1c7e66deeb8a45 SHA1: 9f094f0a85c432c8136ed5a5382a7a1371f30812 SHA256: 2aa2fc4d49eb7e571e66cbfa37809a8fa90c99921e2ceb43b4eed64575f34b8f Section: debug Priority: optional Description: debug symbols for barriers Build-Ids: a4a95006b77e65e89bcb22949a2309565c68a309 b951c704e754a2dbb6e397dd44e9f7d261203a9f Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 109941 Depends: libc6 (>= 2.38), libgcc-s1 (>= 4.3), libstdc++6 (>= 14), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 19804188 MD5sum: 378935b26610eeccc83c651164f89cb7 SHA1: 7a28a3ffde357a137d8e56c85a0d39ce1a2b46cd SHA256: 731af044af3c6094e430a300c705cae6c1c7cc9f5762193972385b7cc5c0db32 Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: mlapack-dev-dbgsym Source: mlapack Version: 0.8.1-2 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 119890 Depends: mlapack-dev (= 0.8.1-2) Filename: amd64/mlapack-dev-dbgsym_0.8.1-2_amd64.deb Size: 119442640 MD5sum: 7fdcfab47f206521f5ad563ef3dbb41b SHA1: 70aa8d2b83fed6be1839ffeeb1485cc3fc7d371d SHA256: 7af79f121f1df2cd7ac42729c057b05f2a534a7016701c2f302123298ddbbc79 Section: debug Priority: optional Description: debug symbols for mlapack-dev Build-Ids: 0749252b0e9e50ae69434b597317e2138fa9681e 461d65e958acf499223e961e41b8b1a16d8245ba 5c4b643cbb4c4596c3703475f48873bdcc2d38b4 6280dec805cfa31e1a90049a94955f319b70cefb 6ba216846c0e6a62a1a4eca68e60519ec9f60e6f 6d7c7f15909c53feff91fbacf1ad3bf3790d9741 70a481b76c325167a47af989a6b31b4be29375ad 81b0c44768424b11c7b2b4070d722ed23c7af1cf 82be96758a75f1e73ae9ea633eedc8c0872ca705 8b62e4894b9f065b023a38adab2316a94a074630 8cf7eabc78015827db66b1954bc47daefa5590c8 932aafea16a931e447abf70920285564650ef6d2 97792ac1a59d2571bfe83beb61ab345fab25cd5c c9cc2d14dba8707261b53b8524d72d932a793ce3 f5d97ede79032457f292b9006c39e7ff18dd0092 Package: perl-rna Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 11828 Depends: perl (>= 5.40.1-6+deb13u1), perlapi-5.40.1, libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), libmpfr6 (>= 3.1.3), libstdc++6 (>= 14) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.7.2-1_amd64.deb Size: 2176144 MD5sum: de06e89b88738aa4efe73d2bc610181d SHA1: 45b5795b9625c9c82dfcd82f0591264ef29ac0e7 SHA256: 48de07f5e0ef7f0ec5287bf4761513418ecbfb82dfe2aaec09b96e75e39abe15 Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 28 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 7524 MD5sum: 9550d57ab48fde40a14befe75166c48b SHA1: 8f3ef440cf2a1e6b1f27653c9e1d8799d6080739 SHA256: b4aaa570fd050274ef1d5c8c6fa0834451f23f9ba9091b9d832f230174bce920 Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: perl-rna-dbgsym Source: viennarna Version: 2.7.2-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 14318 Depends: perl-rna (= 2.7.2-1) Filename: amd64/perl-rna-dbgsym_2.7.2-1_amd64.deb Size: 13217452 MD5sum: 2afbfb078781347702061a6eccb80066 SHA1: 11974a874f6ffba1a1e2f0c980dfbf14c4e15831 SHA256: 26070040a74273940b197e4645f82de9ec35611bbb67c2bf84b0ab467d9db47c Section: debug Priority: optional Description: debug symbols for perl-rna Build-Ids: 84331e8b97b93a732f647ba765ee81314dd1f4e2 Package: python3-rna Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 11928 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3:any, libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), libmpfr6 (>= 3.1.3), libstdc++6 (>= 14) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.7.2-1_amd64.deb Size: 2106688 MD5sum: fbde4a0e328e7adc3a63213ed9c2a1da SHA1: 709694be2b7076f025b514fb77bd461beb23c4d2 SHA256: d0c292f3521f2850640295867913e173e32d80e1f0f169a509fbff3a65e1c2e1 Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: python3-rna-dbgsym Source: viennarna Version: 2.7.2-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 14683 Depends: python3-rna (= 2.7.2-1) Filename: amd64/python3-rna-dbgsym_2.7.2-1_amd64.deb Size: 13308444 MD5sum: b0ea343c92d9cd7911c86374fdc8e8df SHA1: 4d4dab89238692325ac0a410118ec4967e671d43 SHA256: 6e2b3af0ca2a1fee52f73c5ab060ffef4a1cd9962dd919224dc2b647ff105dd6 Section: debug Priority: optional Description: debug symbols for python3-rna Build-Ids: 8c737d2ffe26374df5b6fe4cde2021c7f9d04ab9 Package: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 37959 Depends: libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 14) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.7.2-1_amd64.deb Size: 3348308 MD5sum: 2159ebcf3f00d918cf6030981e0cf30d SHA1: 22c300b601c2e0e3ab116df7063e04ebc2cd6ebd SHA256: 97cee41af2977d279f6fb68f36944317f530ae6f265251d86129ebc49178b7d3 Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dbgsym Source: viennarna Version: 2.7.2-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 45964 Depends: viennarna (= 2.7.2-1) Filename: amd64/viennarna-dbgsym_2.7.2-1_amd64.deb Size: 29635680 MD5sum: 796668bfe2e273f1ad9e5de17d8867bc SHA1: bc986fab4d90d4d4071462823306d11e95c23751 SHA256: e898190221e42a2bd440825956b5b2432a2d369b72f17166b05106cd878d3df2 Section: debug Priority: optional Description: debug symbols for viennarna Build-Ids: 04a38fedb2017718c7fe2d8809c1a575085128c9 04f2779891ba745db83136368753997c489a8519 068e79744ed425b784f744f5ccbc13e0088ea55a 0d09ff584b962356760ca33895388a2a7472bb03 1359e718b19ffe0beb099bc654a73e0bef0d75aa 265d8015250821eff28f4135a26090061216aa04 292096e8437ca35d9c71bb08ba19b290e54664ad 292bf6871a264eac85ca88533561f2f878d6ce14 2c35f8de88fef25d77555ba851adcee67aa172af 3b2ebaf4d415da83d07e980923c7aff9a9a12069 3d72f3ed570ba6f65b3ed341fd2cf8296db41959 498c6d2797f6df13298820e7a9d6915589424072 4e75110fb9ae9ba44944a9b3721c57952879abaa 61d8090a532d4cb015b7868c8716f16617bd9791 6f251fbac7ebd2879f63257f4442ba2bda6a9df3 700e0eddff66d749d0167dda8da265d3d09b40c6 72d74785c919ff0502227e9547ea1544ad18125c 8d14fe4fc8eef7176ab96ec98329838c62094fdc 909b773b58766933c06f53acdca642f8713d1550 938b081eaaf80fe6f69cc9f42015fc10b1470c9c 9e15d09253e95246eb2c905ab3e7a6676cad64b4 9fe2b12d4490fa0f19f2ab91bbd489eaae5d62dd ab573d7f690857375b9d520ffb9d6ed3ef4ce3b2 b64feebb867087108cdca4a8be188d775f948147 c24d4c7dddd8d2d2e0af645526677e694545d6d4 c9d08ea1593785209cd1626bdfe80f8ed1985df4 d3a937800739dfef62d5aed8b7460b2b5a28dc8b e235e39755e9e0d45866d3532ee7cae1fb0090ed ec285cd43afc9200326dbd7a6dd693c605b92819 f09433d55558ed77ec9865916f107238370ab2f7 f1a0ac9b5d4bac0bc733e4885ce3809e1a079adf f26bbc36213b46ef4b2ce247e8b1c134c537cfb0 f35b6e0530e89765043e1388069f54a956ac0583 fb0b77ae31760a9d731fbd3456fc5d63e2d50821 Package: viennarna-dev Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 107190 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.7.2-1_amd64.deb Size: 32688852 MD5sum: 999c816643d80d9340c833b1b4edabdb SHA1: 8f4e494226b0a38f7c30068bec7bb4d228a62618 SHA256: be8d54348f6814693c199a9581def8af605c9981994b824d6c1b348fe606397d Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.7.2-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 27090 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.7.2-1_all.deb Size: 12169356 MD5sum: b9fcda00f62f65166a5f1983e417e9b2 SHA1: eff8ced671ce41e0cbf17d309215786416c4f67d SHA256: daaed9a3f91b8a52ab80bb567455db27d7a5dee288fb966983efe6cf32055708 Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format