Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 153 Depends: libc6 (>= 2.38), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 59156 MD5sum: a76da8bc84b14661cbf67e18ccb91b92 SHA1: aaed2bcbc8e4fc849c60e70b1e9b58484453c550 SHA256: 4339ac835df3c8255220281de9104f1ece120b7d7b7783e903395719b5f6d75d Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 106289 Depends: libc6 (>= 2.38), libgcc-s1 (>= 4.3), libstdc++6 (>= 14), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 23621498 MD5sum: ce1d796fcb0cbd9b82b79431a2136594 SHA1: e6b429cd71ff3ec0ef958fe7bd1ccf2371551b43 SHA256: cd86fa58df6f9c491d52b025a12d55ddd20a181e350efa461f8aade2271ef227 Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: perl-rna Source: viennarna Version: 2.8.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 12025 Depends: perl (>= 5.40.1-7build1), perlapi-5.40.1, libc6 (>= 2.43), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), libmpfr6 (>= 3.1.3), libstdc++6 (>= 14) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.8.0-1_amd64.deb Size: 2414484 MD5sum: 770c10cee63014d8866ce477ca653e45 SHA1: 885f69868d4809057370ead8226163c00f841d90 SHA256: 188908ff2c794474210f13389a78b9f3e6a041fed4d5dd8679131b535c0cb1b7 Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 27 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 6622 MD5sum: c85343e496bbb5cdf98243c4337f5d3d SHA1: fa25abd6f6c53eb98553d305c395436b2f3ba1dd SHA256: ec8cb7b9e58e90daaac316aae10901565eec095ca70bfa2cd272413d40b362ee Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: python3-rna Source: viennarna Version: 2.8.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 15957 Depends: python3 (<< 3.15), python3 (>= 3.14~), python3:any, libc6 (>= 2.43), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), liblapack3 | liblapack.so.3, libmpfr6 (>= 3.1.3), libstdc++6 (>= 14) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.8.0-1_amd64.deb Size: 2655000 MD5sum: f5930607b90e0c91a063173b6898b2fd SHA1: dfd6befc441dab6491db2b1b5eef98b74df921cf SHA256: 1343d87cb2e8850e465afcb5be86fb328de1db80cc12af943aa07ea5126e7dc6 Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: viennarna Version: 2.8.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 39147 Depends: libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.43), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 14) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.8.0-1_amd64.deb Size: 3486092 MD5sum: 2398c7a5bd9e74599ec359fcb34c8fa8 SHA1: e8f227275927958f60ddbefbda2a3d598a7a8c02 SHA256: f29e0e39d5062ebf002c5d38d70d32d2ac16ce1169b34743124eac51e712815e Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dev Source: viennarna Version: 2.8.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 118122 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.8.0-1_amd64.deb Size: 36880654 MD5sum: 3b5654288ca3f705738cda32171d045d SHA1: 34c36dab6d6338053086f0e96f3e9888d2ed3c57 SHA256: e3fc0343723ce93e00bad23a4f2ef7d970b94f7ccba2ef3a1baa783395335c5c Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.8.0-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 37603 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.8.0-1_all.deb Size: 14159878 MD5sum: f368a3c8ab6f45d208a953384dc681d4 SHA1: 7192486a3679e2556dd204c5cf32bb264f90516d SHA256: 92c81424605911a2718f0ef176799361a9e87ca5f841364049f8234cb7f3c4a8 Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format