Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 153 Depends: libc6 (>= 2.38), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 59156 MD5sum: a76da8bc84b14661cbf67e18ccb91b92 SHA1: aaed2bcbc8e4fc849c60e70b1e9b58484453c550 SHA256: 4339ac835df3c8255220281de9104f1ece120b7d7b7783e903395719b5f6d75d Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 106289 Depends: libc6 (>= 2.38), libgcc-s1 (>= 4.3), libstdc++6 (>= 14), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 23621498 MD5sum: ce1d796fcb0cbd9b82b79431a2136594 SHA1: e6b429cd71ff3ec0ef958fe7bd1ccf2371551b43 SHA256: cd86fa58df6f9c491d52b025a12d55ddd20a181e350efa461f8aade2271ef227 Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: perl-rna Source: viennarna Version: 2.8.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 12025 Depends: perl (>= 5.40.1-7build1), perlapi-5.40.1, libc6 (>= 2.43), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), libmpfr6 (>= 3.1.3), libstdc++6 (>= 14) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.8.0-1_amd64.deb Size: 2414302 MD5sum: 421d8635ebe3f210c792643fe78e9c6f SHA1: 27358bceaa3968688718961b396d28e0bcc1967a SHA256: 313c347a6d4c914ced405b56c51c907d8b1ab28f7a0647d06cfb63d1dd79b3a8 Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 27 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 6622 MD5sum: c85343e496bbb5cdf98243c4337f5d3d SHA1: fa25abd6f6c53eb98553d305c395436b2f3ba1dd SHA256: ec8cb7b9e58e90daaac316aae10901565eec095ca70bfa2cd272413d40b362ee Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: python3-rna Source: viennarna Version: 2.8.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 15957 Depends: python3 (<< 3.15), python3 (>= 3.14~), python3:any, libc6 (>= 2.43), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), liblapack3 | liblapack.so.3, libmpfr6 (>= 3.1.3), libstdc++6 (>= 14) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.8.0-1_amd64.deb Size: 2654920 MD5sum: ac3ad919047bdee88326144ae628daec SHA1: 3339bad308926d25c116535055e3c05af8afc70d SHA256: b9b9c7cf45831a8fe51f7e2f1a743be16eca355339faf79c7b41d9c96c4596ce Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: viennarna Version: 2.8.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 39147 Depends: libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.43), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 14) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.8.0-1_amd64.deb Size: 3486298 MD5sum: 9b41ad628ba7b699f7105f0c9c8d0826 SHA1: 9dc7ddc497af0994616e8162612a10863af35c5e SHA256: 11dcee5f5cdd1da696c7fb963439d79a87da8fd04e3cb9c4b209f0732f5f6ca7 Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dev Source: viennarna Version: 2.8.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 118122 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.8.0-1_amd64.deb Size: 36880780 MD5sum: a4699d635436c0cdffcf5f07cb3096bf SHA1: 8f955e1712c76bdc3b3907f15104b31d82e0fb41 SHA256: 010c0816c0d27c470c3ad7f147004dad00f6feb9b95019a05e10d0fffdc18df2 Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.8.0-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 37603 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.8.0-1_all.deb Size: 14159438 MD5sum: 7f050459be3f15fac4d6ed3c3b5d7902 SHA1: f2faf8e81eb920bc0d4595e4db0b4c5ef910cc12 SHA256: 4616844b131925b37dfe72e23535ba6bf9598580c32e8ec7986642a2236036f7 Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format